[Bioc-devel] can't install CRAN Packages after installed devel version of R and Bioc 3.4

Jurat Shayidin juratbupt at gmail.com
Fri Nov 11 15:44:24 CET 2016

Dear BiocDevel:

I ran into the issue after installed devel version of R and Bioc 3.4.
Because my packages depends on some packages from CRAN repository, now I
failed to installed paclages from CRAN. I don't have problem when I used
released version of R. Because new packages must coordinate with devel
version of Bioc and R, so I did it. But can't installl packages from CRAN
like dplyr. How can I overcome this issue ? Any quick solution ?  I got
error as follow:

> BiocInstaller::useDevel()
Error: 'devel' version already in use
> install.packages("dplyr")
Error in install.packages : missing value where TRUE/FALSE needed

> sessionInfo()
R Under development (unstable) (2016-11-09 r71642)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows >= 8 x64 (build 9200)

[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[5] LC_TIME=English_United States.1252

attached base packages:
[1] parallel  stats4    stats     graphics  grDevices
[6] utils     datasets  methods   base

other attached packages:
 [1] SummarizedExperiment_1.5.2 Biobase_2.35.0
 [3] XVector_0.15.0             rtracklayer_1.35.1
 [5] GenomicRanges_1.27.5       GenomeInfoDb_1.11.3
 [7] IRanges_2.9.7              S4Vectors_0.13.2
 [9] BiocGenerics_0.21.0        BiocInstaller_1.25.2

loaded via a namespace (and not attached):
 [1] lattice_0.20-34          XML_3.98-1.5
 [3] Rsamtools_1.27.2         Biostrings_2.43.0
 [5] GenomicAlignments_1.11.0 bitops_1.0-6
 [7] grid_3.4.0               zlibbioc_1.21.0
 [9] Matrix_1.2-7.1           BiocParallel_1.9.1
[11] tools_3.4.0              RCurl_1.95-4.8
[13] compiler_3.4.0

Jurat Shahidin

Dipartimento di Elettronica, Informazione e Bioingegneria
Politecnico di Milano
Piazza Leonardo da Vinci 32 - 20133 Milano, Italy
Mobile : +39 3279366608

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