[Bioc-devel] chimera Attempts to Open Non-existent File

[James W. MacDonald]

This sort of thing should be reported on the support site. The devel
listserv is intended for issues with the development of packages.

On Wed, Nov 2, 2016 at 11:00 PM, Dario Strbenac <dstr7320 at uni.sydney.edu.au>
wrote:

> Good day,
>
> The importFusionData function fails trying to open a file that doesn't
> exist.
>
> > fd = importFusionData("star", "/verona/nobackup/biostat/
> datasets/melanoma/AAHChimeric.out.junction")
> Error in file(file, "rt") : cannot open the connection
> In addition: Warning message:
> In file(file, "rt") :
>   cannot open file 'Thu_Nov_3_13-46-27_2016': No such file or directory
>
> The section of code where the error occurs seems to be in the .starImport
> function.
>
> --------------------------------------
> Dario Strbenac
> University of Sydney
> Camperdown NSW 2050
> Australia
>
> _______________________________________________
> Bioc-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>



-- 
James W. MacDonald, M.S.
Biostatistician
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099

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