[Bioc-devel] error message - package GSAR

Rahmatallah, Yasir YRahmatallah at uams.edu
Thu May 5 22:32:00 CEST 2016

Thank you Dan for clarification. I guess I had bad luck in the last build. 


-----Original Message-----
From: Dan Tenenbaum [mailto:dtenenba at fredhutch.org] 
Sent: Thursday, May 05, 2016 3:26 PM
To: Rahmatallah, Yasir
Cc: bioc-devel
Subject: Re: [Bioc-devel] error message - package GSAR

This is an issue that was reported 3 years ago (http://thr3ads.net/r-devel/2013/04/2193760-Failed-to-locate-the-texi2pdf-output-file) and has not been fixed, probably because it is extremely hard to reproduce. It tends to happen on random packages from one day to the next. In fact, in today's build report which is coming out in a few minutes, the problem does not occur.

So you don't need to do anything.


----- Original Message -----
> From: "Rahmatallah, Yasir" <YRahmatallah at uams.edu>
> To: "bioc-devel" <bioc-devel at r-project.org>
> Sent: Thursday, May 5, 2016 12:28:35 PM
> Subject: [Bioc-devel] error message - package GSAR

> Hi,
> I'm the maintainer of package GSAR. Last Tuesday's build produced the 
> following error message for the Windows platform only
> Warning: running command
> '"C:\Users\BIOCBU?1\AppData\Local\Programs\MIKTEX?1.9\miktex\bin\texify.exe"
> --quiet --pdf "GSAR.tex" --max-iterations=20 -I 
> "E:/biocbld/bbs-3.3-bioc/R/share/texmf/tex/latex" -I 
> "E:/biocbld/bbs-3.3-bioc/R/share/texmf/bibtex/bst"' had status 1 Error 
> in find_vignette_product(name, by = "texi2pdf", engine = engine) :
>  Failed to locate the 'texi2pdf' output file (by engine 
> 'utils::Sweave') for  vignette with name 'GSAR'. The following files exist in directory '.':
>  'Bioconductor.sty', 'GSAR-KCMLplot.pdf', 'GSAR-mst.pdf', 
> 'GSAR-mst2plot.pdf',  'GSAR.Rnw', 'GSAR.bib', 'GSAR.tex', 'unsrturl.bst'
> Calls: <Anonymous> -> find_vignette_product Execution halted
> It seems that the PDF file of the vignette cannot be found. Since the 
> package passes on Linux and Mac platforms, I assume the source of 
> error is not in the vignette's .tex file itself. There is no line in 
> the vignette's code that changes the working directory and all other 
> files in the directory are being listed in the error message. Any idea what caused this error and how to fix it?
> Regards,
> Yasir
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