[Bioc-devel] Error on genes-method,OrganismDbi
Hector Corrada Bravo
hcorrada at gmail.com
Tue May 3 11:57:15 CEST 2016
Hello all,
I just ran into this error. Any help appreciated:
>library(Mus.musculus)
> gr <- genes(Mus.musculus, columns=c("GENEID","SYMBOL"))
Error in get(name, envir = asNamespace(pkg), inherits = FALSE) :
object '.testSelectArgs' not found
> sessionInfo()
R version 3.3.0 RC (2016-05-01 r70572)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.11.4 (El Capitan)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] parallel stats4 stats graphics grDevices utils datasets
[8] methods base
other attached packages:
[1] Mus.musculus_1.3.1
[2] TxDb.Mmusculus.UCSC.mm10.knownGene_3.2.2
[3] org.Mm.eg.db_3.3.0
[4] GO.db_3.3.0
[5] OrganismDbi_1.13.8
[6] GenomicFeatures_1.23.31
[7] GenomicRanges_1.23.27
[8] GenomeInfoDb_1.7.6
[9] AnnotationDbi_1.33.15
[10] IRanges_2.5.47
[11] S4Vectors_0.9.52
[12] Biobase_2.31.3
[13] BiocGenerics_0.17.5
[14] hcbpack_0.1.0
[15] RColorBrewer_1.1-2
[16] devtools_1.11.1
[17] BiocInstaller_1.21.6
loaded via a namespace (and not attached):
[1] graph_1.49.1 XVector_0.11.8
[3] GenomicAlignments_1.7.21 zlibbioc_1.17.1
[5] BiocParallel_1.5.22 tools_3.3.0
[7] SummarizedExperiment_1.1.27 DBI_0.4
[9] withr_1.0.1 RBGL_1.47.0
[11] digest_0.6.9 rtracklayer_1.31.13
[13] bitops_1.0-6 RCurl_1.95-4.8
[15] biomaRt_2.27.2 memoise_1.0.0
[17] RSQLite_1.0.0 Biostrings_2.39.14
[19] Rsamtools_1.23.11 XML_3.98-1.4
>
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