[Bioc-devel] Error on genes-method,OrganismDbi

Hector Corrada Bravo hcorrada at gmail.com
Tue May 3 11:57:15 CEST 2016


Hello all,

I just ran into this error. Any help appreciated:

>library(Mus.musculus)
> gr <- genes(Mus.musculus, columns=c("GENEID","SYMBOL"))
Error in get(name, envir = asNamespace(pkg), inherits = FALSE) :
  object '.testSelectArgs' not found
> sessionInfo()
R version 3.3.0 RC (2016-05-01 r70572)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.11.4 (El Capitan)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] parallel  stats4    stats     graphics  grDevices utils     datasets
[8] methods   base

other attached packages:
 [1] Mus.musculus_1.3.1
 [2] TxDb.Mmusculus.UCSC.mm10.knownGene_3.2.2
 [3] org.Mm.eg.db_3.3.0
 [4] GO.db_3.3.0
 [5] OrganismDbi_1.13.8
 [6] GenomicFeatures_1.23.31
 [7] GenomicRanges_1.23.27
 [8] GenomeInfoDb_1.7.6
 [9] AnnotationDbi_1.33.15
[10] IRanges_2.5.47
[11] S4Vectors_0.9.52
[12] Biobase_2.31.3
[13] BiocGenerics_0.17.5
[14] hcbpack_0.1.0
[15] RColorBrewer_1.1-2
[16] devtools_1.11.1
[17] BiocInstaller_1.21.6

loaded via a namespace (and not attached):
 [1] graph_1.49.1                XVector_0.11.8
 [3] GenomicAlignments_1.7.21    zlibbioc_1.17.1
 [5] BiocParallel_1.5.22         tools_3.3.0
 [7] SummarizedExperiment_1.1.27 DBI_0.4
 [9] withr_1.0.1                 RBGL_1.47.0
[11] digest_0.6.9                rtracklayer_1.31.13
[13] bitops_1.0-6                RCurl_1.95-4.8
[15] biomaRt_2.27.2              memoise_1.0.0
[17] RSQLite_1.0.0               Biostrings_2.39.14
[19] Rsamtools_1.23.11           XML_3.98-1.4
>

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