[Bioc-devel] namespace question

[Zhu, Lihua (Julie)]

Sorry. I meant values.

replacing previous import ŒIRanges::values¹ by Œhash::values¹ when loading
ŒCRISPRseek¹ 

Best,

Julie


On 3/30/16 11:13 PM, "Michael Lawrence" <lawrence.michael at gene.com> wrote:

>I can't find the hash function in IRanges. Are you sure it has one?
>
>On Wed, Mar 30, 2016 at 8:07 PM, Zhu, Lihua (Julie)
><Julie.Zhu at umassmed.edu> wrote:
>> Michael,
>>
>> I have the same user case as Kasper. Another example is that both
>>IRanges
>> and hash packages have hash. I need to use the hash from the hash
>>package
>> instead of the one from IRanges.
>>
>> Best,
>>
>> Julie
>>
>> On Mar 30, 2016, at 7:57 PM, Kasper Daniel Hansen
>> <kasperdanielhansen at gmail.com> wrote:
>>
>> My usecase is when I import() two packages who has a conflict in a name.
>> For example, both Biobase and matrixStats has both anyMissing and
>> rowMedians. I am happy to get all of these two packages, but I need to
>> resolve the conflict.  Since I want to keep the ones from matrixStats I
>>know
>> need to figure out how to import Biobase selectively.  Which I can,
>>using
>> the tools from codetoolsBioC, but I would also be happy with an
>> importFromExcept(), which would make my life much easier.
>>
>> Best,
>> Kasper
>>
>> On Wed, Mar 30, 2016 at 4:47 PM, Michael Lawrence
>> <lawrence.michael at gene.com> wrote:
>>>
>>> I'm curious about which symbols you wouldn't want to import, and why.
>>>
>>> On Wed, Mar 30, 2016 at 12:19 PM, Zhu, Lihua (Julie)
>>> <Julie.Zhu at umassmed.edu> wrote:
>>> > Hi,
>>> >
>>> > Is there a function to import all the exported objects from a package
>>> > except a few named ones in NAMESPACE file?
>>> >
>>> > For example, I would like to import all the functions in S4Vectors
>>> > except fold. Is there a way to  specify this without listing all
>>>other
>>> > functions using importFrom?
>>> >
>>> > Many thanks for your help!
>>> >
>>> > Best regards,
>>> >
>>> > Julie
>>> >
>>> > ********************************************
>>> > Lihua Julie Zhu, Ph.D
>>> > Research Professor
>>> > Department of Molecular, Cell and Cancer Biology (MCCB)
>>> > Head of MCCB Bioinformatics Core
>>> > Program in Molecular Medicine
>>> > Program in Bioinformatics and Integrative Biology
>>> > University of Massachusetts Medical School
>>> > 364 Plantation Street, Room 613
>>> > Worcester, MA 01605
>>> > 508-856-5256 phone
>>> > (508) 856 5460 fax
>>> >
>>> > 
>>>http://profiles.umassmed.edu/profiles/ProfileDetails.aspx?From=SE&Person
>>>=1134
>>> >
>>> >
>>> >         [[alternative HTML version deleted]]
>>> >
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