[Bioc-devel] namespace question

Kasper Daniel Hansen kasperdanielhansen at gmail.com
Thu Mar 31 01:56:52 CEST 2016


My usecase is when I import() two packages who has a conflict in a name.
For example, both Biobase and matrixStats has both anyMissing and
rowMedians. I am happy to get all of these two packages, but I need to
resolve the conflict.  Since I want to keep the ones from matrixStats I
know need to figure out how to import Biobase selectively.  Which I can,
using the tools from codetoolsBioC, but I would also be happy with an
importFromExcept(), which would make my life much easier.

Best,
Kasper

On Wed, Mar 30, 2016 at 4:47 PM, Michael Lawrence <lawrence.michael at gene.com
> wrote:

> I'm curious about which symbols you wouldn't want to import, and why.
>
> On Wed, Mar 30, 2016 at 12:19 PM, Zhu, Lihua (Julie)
> <Julie.Zhu at umassmed.edu> wrote:
> > Hi,
> >
> > Is there a function to import all the exported objects from a package
> except a few named ones in NAMESPACE file?
> >
> > For example, I would like to import all the functions in S4Vectors
> except fold. Is there a way to  specify this without listing all other
> functions using importFrom?
> >
> > Many thanks for your help!
> >
> > Best regards,
> >
> > Julie
> >
> > ********************************************
> > Lihua Julie Zhu, Ph.D
> > Research Professor
> > Department of Molecular, Cell and Cancer Biology (MCCB)
> > Head of MCCB Bioinformatics Core
> > Program in Molecular Medicine
> > Program in Bioinformatics and Integrative Biology
> > University of Massachusetts Medical School
> > 364 Plantation Street, Room 613
> > Worcester, MA 01605
> > 508-856-5256 phone
> > (508) 856 5460 fax
> >
> http://profiles.umassmed.edu/profiles/ProfileDetails.aspx?From=SE&Person=1134
> >
> >
> >         [[alternative HTML version deleted]]
> >
> > _______________________________________________
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>
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