[Bioc-devel] Issues uploading our updated package (CausalR)

Kasper Daniel Hansen kasperdanielhansen at gmail.com
Wed Mar 16 14:19:45 CET 2016

I don't know much about deprecated packages and how to deal with them, but
for your svn questions, start by reading the howto:



On Wed, Mar 16, 2016 at 6:19 AM, Glyn Bradley <glyn.x.bradley at gsk.com>

> Hi All,
> Our package, CausalR, broke when igraph was updated last year. We have now
> fixed this, but are having problems uploading the
> new version. The package had become depreciated in devel, but there's
> still a landing page in release.
> We checked out the existing Bioconductor version (via SVN) to a local
> directory from
> https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CausalR
> The new, fixed, version was uploaded via SVN commit [Revision: 114806*]
> back to
> https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CausalR
> But if you open
> https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CausalR in a
> web browser
> it's still showing old data from Revision: 114827 (we don't understand why
> our new upload had a revision number lower
> than this)
> Also, because CausalR had become depreciated in devel, we were previously
> told we would have to update the package
> in both the devel and release trunks, but we only have the one url
> (https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CausalR)
> So separately to the issues above about our update not seeming to stay on
> the system, could someone please advise how we
> update both trunks?
> Many thanks. Feel free to email me directly if this isn't a suitable
> discussion for the mailing list.
> Glyn
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