[Bioc-devel] spliceSites Vignette build error
Wolfgang.Kaisers at uni-duesseldorf.de
Fri Mar 4 09:41:30 CET 2016
the package check on bioc-LATEST return an error during the vignette
A broken dependency to another package of mine in CRAN seems to be the
The check using the last version available on CRAN is OK on my computer
and I added a dependency "refGenome (>= 1.5.8)" into the DESCRIPTION
But the error is not resolved.
How shall I handle this?
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The error in detail:
The build error message arises from the vignette 'spliceSites.Rnw':
Error: processing vignette 'spliceSites.Rnw' failed with diagnostics:
Error in as.data.frame(y) :
trying to get slot "ev" from an object (class "data.frame") that is
not an S4 object
The error is thrown by the function 'uniqueJuncAnn' (in line 294 chunk
Inside uniqueJuncAnn, there are two data.frames merged (in line 3386 of
The right-hand object (uj at ev$gtf) refers to a 'refJunctions' object
which is defined
in my CRAN package refGenome.
I recently changed the type of this object (which is present on CRAN
since July 2015).
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