[Bioc-devel] New argument 'use.names' in granges() function

Leonard Goldstein goldstein.leonard at gene.com
Fri Jun 17 01:46:43 CEST 2016

Hi Hervé,

I noticed a recent change in the release and development version of
GenomicRanges, which introduces a new argument 'use.names' for granges()
and other functions.

The change breaks the SGSeq package, since it uses granges() relying on
positional argument matching (and 'use.names' has been added preceding
existing arguments). Should GenomicRanges be changed so that newly
arguments occur after existing arguments? Otherwise I can fix the problem
in SGSeq.

Many thanks,


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