[Bioc-devel] BiomartGeneRegionTrack question

[Holly]

Dear Bioconductor helpers,
I am trying to plot a region of interest using the Gviz package.
I met error when running the following example code:
 > library(Gviz)
 > library(GenomicRanges)
 > bmTrack <- BiomartGeneRegionTrack(start=26682683, end=26711643,
+ chromosome=7, genome="mm9")
Entity 'nbsp' not defined
Entity 'hellip' not defined
Entity 'hellip' not defined
Entity 'nbsp' not defined
Entity 'raquo' not defined
Entity 'hellip' not defined
Entity 'hellip' not defined
Entity 'hellip' not defined
Entity 'hellip' not defined
Entity 'hellip' not defined
Opening and ending tag mismatch: img line 68 and li
Opening and ending tag mismatch: li line 68 and ul
Opening and ending tag mismatch: ul line 67 and div
Entity 'copy' not defined
Opening and ending tag mismatch: div line 19 and body
Opening and ending tag mismatch: body line 17 and html
Premature end of data in tag html line 2
Error: 1: Entity 'nbsp' not defined
2: Entity 'hellip' not defined
3: Entity 'hellip' not defined
4: Entity 'nbsp' not defined
5: Entity 'raquo' not defined
6: Entity 'hellip' not defined
7: Entity 'hellip' not defined
8: Entity 'hellip' not defined
9: Entity 'hellip' not defined
10: Entity 'hellip' not defined
11: Opening and ending tag mismatch: img line 68 and li
12: Opening and ending tag mismatch: li line 68 and ul
13: Opening and ending tag mismatch: ul line 67 and div
14: Entity 'copy' not defined
15: Opening and ending tag mismatch: div line 19 and body
16: Opening and ending tag mismatch: body line 17 and html
17: Premature end of data in tag html line 2
 >  sessionInfo()
R version 3.3.1 (2016-06-21)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1

locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252

attached base packages:
  [1] grid      parallel  stats4    stats     graphics  grDevices utils
  [8] datasets  methods   base

other attached packages:
[1] Gviz_1.16.1          GenomicRanges_1.24.2 GenomeInfoDb_1.8.2
[4] IRanges_2.6.1        S4Vectors_0.10.2     BiocGenerics_0.18.0

loaded via a namespace (and not attached):
  [1] SummarizedExperiment_1.2.3    VariantAnnotation_1.18.3
  [3] splines_3.3.1                 lattice_0.20-33
  [5] colorspace_1.2-6              htmltools_0.3.5
  [7] rtracklayer_1.32.1            GenomicFeatures_1.24.4
  [9] chron_2.3-47                  interactiveDisplayBase_1.10.3
[11] survival_2.39-5               XML_3.98-1.4
[13] foreign_0.8-66                DBI_0.4-1
[15] ensembldb_1.4.7               BiocParallel_1.6.2
[17] RColorBrewer_1.1-2            matrixStats_0.50.2
[19] plyr_1.8.4                    zlibbioc_1.18.0
[21] Biostrings_2.40.2             munsell_0.4.3
[23] gtable_0.2.0                  latticeExtra_0.6-28
[25] Biobase_2.32.0                biomaRt_2.28.0
[27] BiocInstaller_1.22.3          httpuv_1.3.3
[29] AnnotationDbi_1.34.4          Rcpp_0.12.5
[31] acepack_1.3-3.3               xtable_1.8-2
[33] BSgenome_1.40.1               scales_0.4.0
[35] Hmisc_3.17-4                  XVector_0.12.0
[37] mime_0.5                      Rsamtools_1.24.0
[39] gridExtra_2.2.1               AnnotationHub_2.4.2
[41] ggplot2_2.1.0                 digest_0.6.9
[43] biovizBase_1.20.0             shiny_0.13.2
[45] tools_3.3.1                   bitops_1.0-6
[47] RCurl_1.95-4.8                RSQLite_1.0.0
[49] dichromat_2.0-0               Formula_1.2-1
[51] cluster_2.0.4                 Matrix_1.2-6
[53] data.table_1.9.6              httr_1.2.1
[55] R6_2.1.2                      rpart_4.1-10
[57] GenomicAlignments_1.8.4       nnet_7.3-12
 >

Thank you for help,
Holly