[Bioc-devel] Looking for small RNA-seq fastq files - to use in Rmarkdown

Krithika Bhuvaneshwar kb472 at georgetown.edu
Fri Jul 15 15:27:47 CEST 2016

Dear Bioconductor community,

I'm exploring options to create a Bioconductor or package related to
RNA-seq data. Specifically, I am looking for an example RNA-seq
dataset (fastq files, human genome, preferably liver cancer) to use in
Rmarkdown files.

As you know the input files to be used in Rmarkdown cannot be large files.

Question - Does anyone know of well-known small RNA-seq fastq files
ready to be used in Bioconductor Rmarkdown ? If not, my only other
option would be to take a sample of a publicly available RNA-seq fastq


More information about the Bioc-devel mailing list