[Bioc-devel] GenRank package build error 0.99.4

Dan Tenenbaum dtenenba at fredhutch.org
Tue Jul 12 21:53:47 CEST 2016

----- Original Message -----
> From: "Chakravarthi Kanduri" <chakra.kanduri at gmail.com>
> To: "bioc-devel" <bioc-devel at r-project.org>
> Sent: Tuesday, July 12, 2016 12:37:29 PM
> Subject: Re: [Bioc-devel] GenRank package build error 0.99.4

> Dear Bioconductor developers,
> The latest build of GenRank package (development version) shows error
> (http://bioconductor.org/checkResults/devel/bioc-LATEST/GenRank/).
> The package was built successfully on my local computer and on Travis,
> but fails on Bioconductor build system. When I checked the error report,
> it says:
> * creating vignettes ... ERROR
> Quitting from lines 44-48 (GenRank_Vignette.Rmd)
> Error: processing vignette 'GenRank_Vignette.Rmd' failed with diagnostics:
> no lines available in input
> Execution halted
> I checked those lines in the vignette. I used an input file in an
> example, which is stored in inst/extdata/ in the package. This worked
> fine with the previous versions of the package, but fails now. Could you
> suggest a turnaround? Thanks.

There is no file inst/extdata/CE_toydata.txt which is what you are trying to read in on line 45 of the vignette.
Could it be that you forgot to add it to the commit?

Try 'svn st' or 'git status' to see if it has been added.


> Regards,
> Chakri
>	[[alternative HTML version deleted]]
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