[Bioc-devel] hg133plus2.db

Obenchain, Valerie Valerie.Obenchain at roswellpark.org
Wed Dec 28 05:00:19 CET 2016


I think you're missing a 'u',

> biocLite("hgu133plus2.db")
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.5 (BiocInstaller 1.25.2), R Under development
(unstable)
  (2016-10-22 r71581).
Installing package(s) ‘hgu133plus2.db’
trying URL
'https://bioconductor.org/packages/3.5/data/annotation/src/contrib/hgu133plus2.db_3.2.3.tar.gz'
Content type 'application/x-gzip' length 2139642 bytes (2.0 MB)
==================================================
downloaded 2.0 MB

Val

On 12/27/2016 02:00 PM, Levi Waldron wrote:
> I don't seem to be able to install hgu133plus2.db in bioc-devel?
>
>> library(BiocInstaller)
> Bioconductor version 3.5 (BiocInstaller 1.25.2), ?biocLite for help
>
>> biocLite("hg133plus2.db")
> BioC_mirror: https://bioconductor.org
>
> Using Bioconductor 3.5 (BiocInstaller 1.25.2), R Under development (unstable)
>
>   (2016-10-26 r71594).
>
> Installing package(s) ‘hg133plus2.db’
>
> Warning: unable to access index for repository
> https://cran.rstudio.com/bin/macosx/mavericks/contrib/3.4:
>
>   cannot download all files
>
> Warning message:
>
> package ‘hg133plus2.db’ is not available (for R Under development)
>
>> sessionInfo()
> R Under development (unstable) (2016-10-26 r71594)
>
> Platform: x86_64-apple-darwin13.4.0 (64-bit)
>
> Running under: OS X Yosemite 10.10.5
>
>
> locale:
>
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>
>
> attached base packages:
>
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
>
> other attached packages:
>
> [1] BiocInstaller_1.25.2
>
>
> loaded via a namespace (and not attached):
>
> [1] tools_3.4.0
>
>



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