[Bioc-devel] bioc AMI: permissions in R-libs

[Obenchain, Valerie]

Hi Simon,

Yes, this is a known problem. I will fix this for the Bioc 3.3 and 3.4
AMIs and will post back when it's done.

Valerie

On 08/24/2016 04:45 AM, Simon Anders wrote:
> Hi
>
> I'm currently working with the Bioconductor Amazon Machine Instance
> (AMI) for Bioc 3.3 (ami-64d43409) and wanted to install additional
> packages with biocLite(). This failed because about half of the
> sub-directories in ~/R-libs are not owned by the standard user 'ubuntu'
> but by root. 
>
> Can this be easily fixed in the existing AMI? (I mean, can one just
> run a 'chown' and save it as a new AMI?) If so, this might be useful.
>
>
> Thanks
>
>   Simon
>
>
> --
> | Dr. Simon Anders, Dipl.-Phys.
> | Group Leader, Institute for Molecular Medicine Finland (FIMM)
> | https://www.fimm.fi/en/research/groups/anders
>
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>



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