[Bioc-devel] commit changes with scenario 1

[Dan Tenenbaum]

----- Original Message -----
> From: "Karim Mezhoud" <kmezhoud at gmail.com>
> To: "bioc-devel" <bioc-devel at r-project.org>
> Sent: Tuesday, August 2, 2016 2:53:53 PM
> Subject: [Bioc-devel] commit changes with scenario 1

> I am trying to commit some changes to bioCancer
> <https://github.com/Bioconductor-mirror/bioCancer>. the issue is no changes
> added to commit.
> 
> Please, here is commands. Thanks
> 
>   -  git clone https://github.com/Bioconductor-mirror/bioCancer
>   - cd bioCancer/
>   - ../update_remotes.sh
> 
> 
> Already on 'master'
> Your branch is up-to-date with 'origin/master'.
> Rebuilding
> .git/svn/refs/remotes/git-svn/.rev_map.bc3139a8-67e5-0310-9ffc-ced21a209358
> ...
> r117706 = 3d3efd35ec0406c4aaa4be764cf4ccb36a77d132
> Done rebuilding
> .git/svn/refs/remotes/git-svn/.rev_map.bc3139a8-67e5-0310-9ffc-ced21a209358
> Current branch master is up to date.
> Commit to git as normal, when you want to push your commits to svn
>  1. `git svn rebase` to get the latest SVN changes.
>  2. `git svn dcommit --add-author-from` to commit your changes to SVN.
> 
> 
> 
>   - Change manually  vignette.Rmd file
>   - git commit -m "just vignette"

In your git commit command you are not specifying a file to commit. 
You should either add the -a flag to commit all changed files (which have already been added) or specify the file(s) you want to commit on the command line.

Dan




> 
> On branch master
> Your branch is up-to-date with 'origin/master'.
> Changes not staged for commit:
>    modified:   vignettes/bioCancer.Rmd
> 
> no changes added to commit
> 
>   - git svn rebase
> 
> vignettes/bioCancer.Rmd: needs update
> update-index --refresh: command returned error: 1
> 
> 
> 
>   - git svn dcommit --add-author-from
> 
> vignettes/bioCancer.Rmd: needs update
> update-index --refresh: command returned error: 1
> 
>	[[alternative HTML version deleted]]
> 
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