[Bioc-devel] SummarizedExperiment with alternate back end
hpages at fredhutch.org
Fri Sep 18 22:40:51 CEST 2015
This is actually on "our" TODO list for after the release.
SummarizedExperiment was designed to support alternate back end
for the assays slot. More details and proof of concept are
On 09/18/2015 01:29 PM, Vincent Carey wrote:
> i am dealing with ~700 450k arrays
> they are derived from one study, so it makes sense to think of
> them holistically.
> both the load time and the memory consumption are not satisfactory.
> has anyone worked on an object type that implements the rangedSE API but has
> the assay data out of memory?
> user system elapsed
> 30.131 2.396 61.036
> 124031032 bytes
>  485577 690
> 2680430992 bytes
> [[alternative HTML version deleted]]
> Bioc-devel at r-project.org mailing list
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024
E-mail: hpages at fredhutch.org
Phone: (206) 667-5791
Fax: (206) 667-1319
More information about the Bioc-devel