[Bioc-devel] Bioconductor Git/GitHub Mirrors

Mike wjiang2 at fhcrc.org
Sat Sep 12 00:19:17 CEST 2015

I finally got to the bottom of my issue. It's the ' color.branch' 
variable that causes the trouble for the bash script. Because I had 
explicitly set it to 'always' in my '~/.gitconfig' file, `git branch -r 
` command append the wierd control characters to the release branch 
name, e.g. 'release-3.0^[[m', which messed up the 'svn-remote' 
subsection within '.git/config' file.  After I changed this variable 
value to 'auto',  the script runs successfully now.

Thanks a lot!

On 06/19/2015 12:25 PM, Jim Hester wrote:
> Mike,
> We are unable to reproduce this issue using the commands provided.  
> Maybe try starting over from scratch and see if it works, perhaps 
> there was a network error the first time you tried it?
> Jim
> On Fri, Jun 19, 2015 at 3:03 PM, Mike <wjiang2 at fhcrc.org 
> <mailto:wjiang2 at fhcrc.org>> wrote:
>     I am having trouble to set up the remote.
>     git clone https://github.com/RGLab/flowQ
>     cd flowQ/
>     git branch  -a
>     * master
>       remotes/origin/HEAD -> origin/master
>       remotes/origin/master
>     curl -O
>     https://raw.githubusercontent.com/Bioconductor/mirror/master/update_remotes.sh
>     bash update_remotes.sh
>     fatal: refs/remotes/bioc/release-3.0: not a valid SHA1
>     Mike
>     _______________________________________________
>     Bioc-devel at r-project.org <mailto:Bioc-devel at r-project.org> mailing
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