[Bioc-devel] PANTHER.db GOSLIM_ID hosed?

Steve Lianoglou lianoglou.steve at gene.com
Fri Nov 20 10:24:44 CET 2015

Hi all,

I'm running the latest Bioc + PANTHER.db

I think we've got the GOSLIM_TERM where the GOSLIM_ID should be:

In the vignette, we have this:

R> go_ids <- head(keys(PANTHER.db,keytype="GOSLIM_ID"))
R> go_ids

## [1] "GO:0000003" "GO:0000165" "GO:0000166" "GO:0000228"
"GO:0000375" "GO:0000398"

But what we really get is:

R> head(keys(PANTHER.db,keytype="GOSLIM_ID"))

[1] "2-arachidonoylglycerol biosynthesis"
[2] "5-Hydroxytryptamine biosynthesis"
[3] "5-Hydroxytryptamine degredation"
[4] "5HT1 type receptor mediated signaling pathway"

R> packageVersion('PANTHER.db')
[1] '1.0.2'


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