[Bioc-devel] development vs release version

[Kevin Rue-Albrecht]

Hi Dan, all

Maybe a silly question, but: where is the R-alpha 3.2.0 ?

So far, I have only pushed to the devel branch (3.1.x), hoping that all my
commits (most recent: 19 Mar) will be integrated into the release version
(3.2.0).
This is only my second release cycle. I remember that the first time,
bioc-sync
<https://github.com/kevinrue/GOexpress/commits/master?author=bioc-sync>
updated the release number, but I haven't seen that happen yet in either
the release or the devel branches.

Is there any other place I should think of committing/pushing changes if I
spot a typo/bug in the next few days?

Thanks a million !
Kevin


On 22 March 2015 at 18:57, Dan Tenenbaum <dtenenba at fredhutch.org> wrote:

>
>
> ----- Original Message -----
> > From: "Vincent Carey" <stvjc at channing.harvard.edu>
> > To: "Eric Frichot" <eric.frichot at gmail.com>
> > Cc: bioc-devel at r-project.org
> > Sent: Sunday, March 22, 2015 11:42:52 AM
> > Subject: Re: [Bioc-devel] development vs release version
> >
> > On Sun, Mar 22, 2015 at 2:27 PM, Eric Frichot
> > <eric.frichot at gmail.com>
> > wrote:
> >
> > > Ok. Thanks for your help. It worked with the r-devel
> > >
> > > I assume that my package will be available with the current version
> > > of R
> > > after the next bioconductor release ?
> > >
> > >
> > The next Bioconductor release will follow on the transition of
> > R-release/R-patched to
> > the 3.2.x series.
> >
> >
> > > If I add a new version for my package, after the release, people
> > > will also
> > > have to install the r-devel to access this new version ?
> > >
> > >
> > The current R-devel, 3.2.x, will be the released version in a couple
> > of
> > weeks.
>
>
> Actually, R-devel is currently version 3.3.0. You should not use this
> version, instead you should use what's currently R-alpha (3.2.0).
>
>
> > That is
> > what folks will have to use to get your package in the release
> > version.
> > Those using
> > R-devel later on can get the devel version of your package as it
> > evolves.
> >
> > Some relevant concepts are at
> >
> > http://master.bioconductor.org/developers/how-to/version-numbering/
> >
> > but ... there is likely a more transparent discussion of the
> > release/devel
> > distinctions
> > somewhere that I am not finding currently.  If questions remain
> > please let
> > us know.
> >
>
> It's discussed a bit at
> http://bioconductor.org/developers/how-to/source-control/ under "where to
> commit.
>
> See also http://bioconductor.org/developers/package-submission/#acceptance
> .
>
> Dan
>
>
>
> >
> > > Thanks,
> > >
> > > Eric Frichot
> > >
> > >
> > > On Sun, Mar 22, 2015 at 7:01 PM Vincent Carey
> > > <stvjc at channing.harvard.edu>
> > > wrote:
> > >
> > >> The message means that you should use R-devel to get your package.
> > >> R 3.1.3 is currently regarded as R-patched.
> > >>
> > >> On Sun, Mar 22, 2015 at 1:44 PM, Eric Frichot
> > >> <eric.frichot at gmail.com>
> > >> wrote:
> > >>
> > >>> Hi everyone,
> > >>>
> > >>> I am new in the bioconductor community. I just finished the
> > >>> bioconductor
> > >>> review of my package called LEA. By the way, all your feedbacks
> > >>> are more
> > >>> than welcome about it.
> > >>>
> > >>> I am not sure to understand how the release of a new version
> > >>> works in
> > >>> bioconductor. I have few questions you may help me with.
> > >>>
> > >>> I just downloaded my package through bioconductor. So, it is
> > >>> under
> > >>> development. I tried to install my package using biocLite
> > >>> function. I got
> > >>> the error message
> > >>>
> > >>> package ‘LEA’ is not available (for R version 3.1.3)
> > >>>
> > >>> Does it mean that I have to wait the next bioconductor release ?
> > >>>
> > >>> If it is the case, imagine that I add new features for my
> > >>> package, do I
> > >>> have to wait the next release (every 6 month) for these features
> > >>> to be
> > >>> available ?
> > >>>
> > >>> Thanks a lot for your help,
> > >>>
> > >>> Eric Frichot
> > >>>
> > >>>         [[alternative HTML version deleted]]
> > >>>
> > >>> _______________________________________________
> > >>> Bioc-devel at r-project.org mailing list
> > >>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> > >>>
> > >>
> > >>
> >
> >       [[alternative HTML version deleted]]
> >
> > _______________________________________________
> > Bioc-devel at r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >
>
> _______________________________________________
> Bioc-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>



-- 
Kévin RUE-ALBRECHT
Wellcome Trust Computational Infection Biology PhD Programme
University College Dublin
Ireland
http://fr.linkedin.com/pub/k%C3%A9vin-rue/28/a45/149/en

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