[Bioc-devel] using devel bug
Kasper Daniel Hansen
kasperdanielhansen at gmail.com
Tue Mar 10 19:08:42 CET 2015
Ok, I had to manually remove the BiocInstaller package, restart R and then
run biocLite and I am now on BiocInstaller 1.17.5 ~ Bioconductor 3.0
Clearly, there is some issue with the IS_UPGRADEABLE variable which (I
guess) is initialized at install time.
On Tue, Mar 10, 2015 at 2:01 PM, Kasper Daniel Hansen <
kasperdanielhansen at gmail.com> wrote:
> Using R-devel, I get
> R Under development (unstable) (2015-03-09 r67969) -- "Unsuffered
> Copyright (C) 2015 The R Foundation for Statistical Computing
> Platform: x86_64-unknown-linux-gnu (64-bit)
> R is free software and comes with ABSOLUTELY NO WARRANTY.
> You are welcome to redistribute it under certain conditions.
> Type 'license()' or 'licence()' for distribution details.
> Natural language support but running in an English locale
> R is a collaborative project with many contributors.
> Type 'contributors()' for more information and
> 'citation()' on how to cite R or R packages in publications.
> Type 'demo()' for some demos, 'help()' for on-line help, or
> 'help.start()' for an HTML browser interface to help.
> Type 'q()' to quit R.
> ** Hopkins NEWS and Notes **
> News and updates for the R installation will be sent to bit-help, so
> consider subscribing
> An automatic user library has been created (in case it did not already
> exist) as
> install.packages and R CMD INSTALL will automatically install to this
> directory, so there is no need for a -l or a lib argument to these
> Loading required package: utils
> > source("http://www.bioconductor.org/biocLite.R")
> Bioconductor version 3.0 (BiocInstaller 1.16.1), ?biocLite for help
> Why? In the past it would auto-detect my R version and automatically use
> Bioc devel. Also, I get
> > useDevel(TRUE)
> Error: 'devel' version requires a more recent R
> Enter a frame number, or 0 to exit
> 1: useDevel(TRUE)
> 2: .stop("'devel' version requires a more recent R")
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