[Bioc-devel] Changes to the SummarizedExperiment Class

Tim Triche, Jr. tim.triche at gmail.com
Wed Mar 4 00:42:26 CET 2015


It would be damned near perfect as a return value for assays coming out of
an object that held several such assays at several time points in a
population, where there are both assay-wise and covariate-wise "holes" that
could nonetheless be usefully imputed across assays.

Statistics is the grammar of science.
Karl Pearson <http://en.wikipedia.org/wiki/The_Grammar_of_Science>

On Tue, Mar 3, 2015 at 3:25 PM, Peter Haverty <haverty.peter at gene.com>

> >
> >
> >
> >  I still think GRanges should be a subclass of DataFrame,
> >> which would make this easy, but I don't seem to be winning that
> argument.
> >>
> >
> > Just impossible. As Michael mentioned back in November, they have
> > conflicting APIs.
> Maybe a new "GRangesFrame" that is a DataFrame and holds a GRanges
> (without mcols) as an index?
>         [[alternative HTML version deleted]]
> _______________________________________________
> Bioc-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel

	[[alternative HTML version deleted]]

More information about the Bioc-devel mailing list