[Bioc-devel] consider running tools::compactPDF() on these files

[Ramon Diaz-Uriarte]

Thanks Dan.

Best,


R.


On Thu, 18-06-2015, at 20:10, Dan Tenenbaum <dtenenba at fredhutch.org> wrote:
> ----- Original Message -----
>> From: "Ramon Diaz-Uriarte" <rdiaz02 at gmail.com>
>> To: bioc-devel at r-project.org
>> Cc: "ramon diaz" <ramon.diaz at iib.uam.es>
>> Sent: Thursday, June 18, 2015 11:00:51 AM
>> Subject: [Bioc-devel] consider running tools::compactPDF() on these files
>> 
>> Dear All,
>> 
>> A package of mine is generating a NOTE about the vignette (a long >
>> 80 pages
>> document) saying
>> 
>> "consider running tools::compactPDF() on these files"
>> 
>> (http://www.bioconductor.org/checkResults/devel/bioc-LATEST/OncoSimulR/zin1-checksrc.html
>> ---yes, there is also a WARNING and it fails on Windoze; I am working
>> on that,
>> but I think I know how to fix those.)
>> 
>> 
>> Anyway, the documentation for compactPDF says "Support function for R
>> CMD
>> build --compact-vignettes. " but since I upload the original Rnw, is
>> there
>> anything I can do with this NOTE? Googling around I do not find
>> anything
>> BioC related.
>> 
>
> I don't think there is anything _you_ can do, as our build system does not use the --compact-vignettes option with R CMD build. Maybe it should, but in any case this is not anything you need to worry about.
>
> Thanks,
> Dan
>
>
>> 
>> Best,
>> 
>> 
>> R.
>> 
>> 
>> --
>> Ramon Diaz-Uriarte
>> Department of Biochemistry, Lab B-25
>> Facultad de Medicina
>> Universidad Autónoma de Madrid
>> Arzobispo Morcillo, 4
>> 28029 Madrid
>> Spain
>> 
>> Phone: +34-91-497-2412
>> 
>> Email: rdiaz02 at gmail.com
>>        ramon.diaz at iib.uam.es
>> 
>> http://ligarto.org/rdiaz
>> 
>> _______________________________________________
>> Bioc-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>> 

-- 
Ramon Diaz-Uriarte
Department of Biochemistry, Lab B-25
Facultad de Medicina
Universidad Autónoma de Madrid 
Arzobispo Morcillo, 4
28029 Madrid
Spain

Phone: +34-91-497-2412

Email: rdiaz02 at gmail.com
       ramon.diaz at iib.uam.es

http://ligarto.org/rdiaz