[Bioc-devel] Rendering of vignette R code on the website

Wolfgang Huber whuber at embl.de
Thu Jun 18 14:47:27 CEST 2015


Perhaps a buglet in the build system / the website code? --

When I follow the link to “R Script” on the page http://www.bioconductor.org/packages/devel/bioc/html/DESeq2.html
(i.e. http://www.bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2.R ) the result is a nearly empty file.

With other packages, e.g. BiocStyle, this does not happen, and code is shown: 
http://bioconductor.org/packages/devel/bioc/vignettes/BiocStyle/inst/doc/LatexStyle.R

I am also confused about the first lines of both of these files:
### R code from vignette source 'vignettes/DESeq2/inst/doc/DESeq2.Rnw'
### R code from vignette source 'vignettes/BiocStyle/inst/doc/LatexStyle.Rnw'
as the stated paths do (should) not exist.

Thanks and best wishes
Wolfgang



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