[Bioc-devel] csaw - suggestions

Sean Davis seandavi at gmail.com
Tue Jul 7 10:04:14 CEST 2015

Hi, Arne.

This question is best posted on the support site:


To give a preview of the answer, though, while coverage and binned counts
are related concepts, they are not really identical.  The csaw package is
looking for read counts.


On Tue, Jul 7, 2015 at 3:58 AM, Arne Müller <arne.muller at gmail.com> wrote:

> Hello,
> would it be possible+reasonable to enter csaw peak calling with RleList
> object such as those generated by the GenomicAlignments' coverage method?
> I'm not 100% sure but. I guess it'd be more performant to store and load
> the RleList objects compared to bam files.
>      regards,
>      Arne
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