[Bioc-devel] Package submission with library requirement

[avinash sahu]

Thanks for mail Karim.

I have GOAL staisfies all guidelines.
However, GOAL is not compiling in windows and because of its heavy
computational  requirement its cannot be used with Windows.
Regarding third party code, bioconductor website mentions (i.e. ransampl):
"In cases where the external library is complex the author may need to
supply pre-built binary versions for some platforms." How to provide such
binaries for linux and Mac to bioconductor.

thanks
avi

On Wed, Jan 21, 2015 at 2:39 PM, Karim Mezhoud <kmezhoud at gmail.com> wrote:

> Hi,
>
> Before you submit your package, please make sure that it satisfies all our
>
> guidelines here.
>
> http://www.bioconductor.org/developers/package­guidelines/
>
> Be sure that you tested it with the appropriate version of R. To work
>
> out which version that is, please have a look at this site here:
>
> http://www.bioconductor.org/developers/how­to/useDevel/
>
> Then use our tracking system for package submission (which can be
>
> found here):
>
> https://tracker.bioconductor.org/
>
> recommended video:
> https://www.youtube.com/watch?v=QfqaK_BHebU
>
> Karim
>
>   Ô__
>  c/ /'_;~~~~kmezhoud
> (*) \(*)   ⴽⴰⵔⵉⵎ  ⵎⴻⵣⵀⵓⴷ
> http://bioinformatics.tn/
>
>
>
> On Wed, Jan 21, 2015 at 2:24 PM, avinash sahu <avinash.sahu at gmail.com>
> wrote:
>
>> Hi all,
>>
>> I am trying to submit a package (https://github.com/vinash85/GOAL) in
>> bioconductor. It requires a ransampl (
>> http://sourceforge.net/projects/ransampl/) and gsl libraries already
>> installed in system.
>> The package is failing to install at automated package installer of
>> bioconductor (
>>
>> http://bioconductor.org/spb_reports/GOAL_0.99.0_buildreport_20150121045701.html
>> ).
>> How to take care of additional Libraries?
>>
>> Further, the package is meant for Linux and Mac ( it is NOT currently
>> compiling in windows). Is it possible to submit the package in
>> pre-compiled
>> binaries form for Mac and Linux.
>>
>> This is the first package that I am submitting to BioConductor, so I am
>> not
>> aware of these issues.
>>
>> thanks in advance
>> avi
>>
>>         [[alternative HTML version deleted]]
>>
>> _______________________________________________
>> Bioc-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>
>
>

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