[Bioc-devel] Feature Request--add host and port to makeTxDbPackageFromBiomart

Marc Carlson mcarlson at fredhutch.org
Fri Feb 27 23:43:30 CET 2015

Hi Sean,

This seems like a solid suggestion.  I have put it into my queue.


On 02/27/2015 04:41 AM, Sean Davis wrote:
> Hi, Marc.
> Since Ensembl has switched to GRCh38 for their most recent builds, to get
> access to GRCh37 data now requires a different host and port for biomaRt.
> These are exposed in the makeTxDbFromBiomart, but not the accompanying
> functionality to directly make a package.  Would it make sense to add host
> and port as arguments for the latter?
> Thanks,
> Sean
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