[Bioc-devel] vignettes is missing after build

[Martin Morgan]

On 02/10/2015 01:51 AM, Guangchuang Yu wrote:
> Dear all,
>
> I found the vignette of my package DOSE is missing,
> http://bioconductor.org/packages/devel/bioc/html/DOSE.html.
>
> I am pretty sure the I don't have .Rbuildignore file and the vignette,
> DOSE.Rnw, passing the build with knit2pdf.
>
> Not only it is missing in the bioconductor website, but also missing after
> R CMD build in my computer.
>
> Does anyone have any idea?

Hi Guangchuang --

If I do

DOSE/vignettes$ R CMD Sweave DOSE.Rnw
Bioconductor version 3.1 (BiocInstaller 1.17.5), ?biocLite for help
Error: Vignette engine package not specified
Execution halted

Hmm.... I think in your LaTeX document you need '::' rather than ':' in

% \VignetteEngine{knitr::knitr}

Also, the DOSE.pdf should be removed from the vignette/ directory (it gets built!).

Martin

>
>
> Best Regards,
> Guangchuang Yu
>
> 	[[alternative HTML version deleted]]
>
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