[Bioc-devel] Rsamtools/AnnotationHub Error for FaFile - multiple methods tables found for ‘relistToClass’

[Sonali B Arora]

Hi everyone,

I am trying to get a FaFile from AnnotationHub - It fails with the 
following error

library(AnnotationHub)
ah =AnnotationHub()
ah = query(ah , c("Homo sapiens", "org", "GRCH37", "FASTA","75"))
hg37_rna = ah[["AH10879"]]

 > hg37_rna = ah[["AH10879"]]
require(“Rsamtools”)
Error: failed to load 'AnnotationHub' resource
   name: AH10879
   title: Homo_sapiens.GRCh37.75.ncrna.fa
   reason: require(“Rsamtools”) failed: multiple methods tables found 
for ‘relistToClass’


 > sessionInfo()
R Under development (unstable) (2015-10-15 r69519)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 14.04.2 LTS

locale:
  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
  [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats4    parallel  stats     graphics  grDevices utils datasets
[8] methods   base

other attached packages:
[1] GenomeInfoDb_1.7.3  IRanges_2.5.18      S4Vectors_0.9.15
[4] AnnotationHub_2.3.6 BiocGenerics_0.17.2

loaded via a namespace (and not attached):
  [1] Rcpp_0.12.2                  AnnotationDbi_1.33.3
  [3] magrittr_1.5                 zlibbioc_1.17.0
  [5] xtable_1.8-0                 R6_2.1.1
  [7] stringr_1.0.0                httr_1.0.0
  [9] tools_3.3.0                  Biobase_2.31.3
[11] DBI_0.3.1                    htmltools_0.2.6
[13] digest_0.6.8                 interactiveDisplayBase_1.9.0
[15] shiny_0.12.2                 curl_0.9.4
[17] RSQLite_1.0.0                mime_0.4
[19] stringi_1.0-1                BiocInstaller_1.21.2
[21] httpuv_1.3.3


-- 
Thanks and Regards,
Sonali
Office: C2-169
http://tinyurl.com/sonali-hb-calendar