[Bioc-devel] Extending biovizBase and ggbio packages

Michael Lawrence lawrence.michael at gene.com
Mon Dec 14 14:46:31 CET 2015

Sounds very useful. Perhaps you could make a github pull request on
the Bioconductor mirrors of those packages. Then Tengfei or I could
look it over.

Btw, I like the filtering functionality in ensemldb. Would be nice to
have something as rich for TxDb. Would be great if there were
convenience wrappers like subset() and sort(). Like
transcripts(sort(subset(db, seqname == "chr1"), by = geneSymbol)).


On Mon, Dec 14, 2015 at 4:12 AM, Rainer Johannes
<Johannes.Rainer at eurac.edu> wrote:
> Dear all,
> I’ve modified the biovizBase and ggbio packages so that they do directly support EnsDb annotations (just like annotations provided by TxDb objects/packages).
> Is there a way I could provide these changes? I’ve directly contacted Tengfei last week, but did not get any reply yet…
> cheers, jo
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