[Bioc-devel] Support site

[Dan Tenenbaum]

Thanks for reporting this. Looks like the elasticsearch daemon stopped for some reason. It's back up now.
Dan


----- Original Message -----
> From: "Aedin Culhane" <aedin at jimmy.harvard.edu>
> To: bioc-devel at r-project.org
> Sent: Friday, August 28, 2015 2:07:18 PM
> Subject: Support site
> 
> Hi
> I tried to query the support site and got "connection aborted".
> Therefore I tried a "popular" query and entered Limma and still get
> connection aborted. Any suggestions. I enclose a screen short of the
> Error and the traceback below.
> Aedin
> 
> 
> 
> Environment:
> 
> 
> Request Method: GET
> Request URL:
> https://support.bioconductor.org/local/search/page/?q=RNA
> 
> Django Version: 1.6.5
> Python Version: 2.7.6
> Installed Applications:
> ['django.contrib.auth',
>   'django.contrib.contenttypes',
>   'django.contrib.messages',
>   'django.contrib.staticfiles',
>   'django.contrib.sitemaps',
>   'compressor',
>   'django.contrib.sites',
>   'django.contrib.admin',
>   'django.contrib.humanize',
>   'django.contrib.flatpages',
>   'django.contrib.sessions',
>   'biostar.apps.users',
>   'biostar.apps.util',
>   'biostar.apps.posts',
>   'biostar.apps.messages',
>   'biostar.apps.badges',
>   'biostar.apps.planet',
>   'biostar.server',
>   'allauth',
>   'allauth.account',
>   'allauth.socialaccount',
>   'allauth.socialaccount.providers.persona',
>   'allauth.socialaccount.providers.google',
>   'allauth.socialaccount.providers.facebook',
>   'allauth.socialaccount.providers.github',
>   'allauth.socialaccount.providers.stackexchange',
>   'allauth.socialaccount.providers.twitter',
>   'haystack',
>   'crispy_forms',
>   'djcelery',
>   'kombu.transport.django',
>   'south']
> Installed Middleware:
> ('django.middleware.common.CommonMiddleware',
>   'django.contrib.sessions.middleware.SessionMiddleware',
>   'django.middleware.csrf.CsrfViewMiddleware',
>   'django.contrib.auth.middleware.AuthenticationMiddleware',
>   'django.contrib.messages.middleware.MessageMiddleware',
>   'django.middleware.clickjacking.XFrameOptionsMiddleware',
>   'django.contrib.flatpages.middleware.FlatpageFallbackMiddleware',
>   'biostar.server.middleware.Visit')
> 
> 
> Traceback:
> File
> "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/django/core/handlers/base.py"
> in get_response
>    112.                     response = wrapped_callback(request,
> *callback_args, **callback_kwargs)
> File
> "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/django/views/generic/base.py"
> in view
>    69.             return self.dispatch(request, *args, **kwargs)
> File
> "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/django/views/generic/base.py"
> in dispatch
>    87.         return handler(request, *args, **kwargs)
> File
> "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/django/views/generic/list.py"
> in get
>    137.         self.object_list = self.get_queryset()
> File "/home/www-data/biostar-central/biostar/server/search.py" in
> get_queryset
>    62.         query =
> SearchQuerySet().filter(content=content).highlight()[:50]
> File
> "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/haystack/query.py"
> in __getitem__
>    268.                 self._fill_cache(start, bound)
> File
> "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/haystack/query.py"
> in _fill_cache
>    166.         results = self.query.get_results(**kwargs)
> File
> "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/haystack/backends/__init__.py"
> in get_results
>    644.                 self.run(**kwargs)
> File
> "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/haystack/backends/elasticsearch_backend.py"
> in run
>    949.         results = self.backend.search(final_query,
>    **search_kwargs)
> File
> "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/haystack/backends/__init__.py"
> in wrapper
>    34.             return func(obj, query_string, *args, **kwargs)
> File
> "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/haystack/backends/elasticsearch_backend.py"
> in search
>    516. doc_type='modelresult')
> File
> "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/pyelasticsearch/client.py"
> in decorate
>    93.             return func(*args, query_params=query_params,
>    **kwargs)
> File
> "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/pyelasticsearch/client.py"
> in search
>    859.         return self._search_or_count('_search', query,
>    **kwargs)
> File
> "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/pyelasticsearch/client.py"
> in _search_or_count
>    836.             query_params=query_params)
> File
> "/home/www-data/.virtualenvs/biostarsenv/lib/python2.7/site-packages/pyelasticsearch/client.py"
> in send_request
>    281.             raise exc.info
> 
> Exception Type: ProtocolError at /local/search/page/
> Exception Value: ('Connection aborted.', error(111, 'Connection
> refused'))
> 
>