[Bioc-devel] biocLite misbehavior?

[Vincent Carey]

install.packages works on the given machine ... seems to be latest source
version

of BiocInstaller.  perhaps related to https conversion?

> biocLite()


Enter a frame number, or 0 to exit


1: biocLite()

2: .isCurrentBiocInstaller()

3: .getContribUrl(biocVersion())

4: biocinstallRepos(version = biocVersion)

5: getOption("BioC_mirror", sprintf("%s//bioconductor.org", .protocol()))

6: sprintf("%s//bioconductor.org", .protocol())

7: .protocol()

8: close(con)

9: close.connection(con)


Selection: 0

> sessionInfo()

R version 3.2.2 Patched (2015-08-18 r69117)

Platform: x86_64-pc-linux-gnu (64-bit)

Running under: CentOS release 6.6 (Final)


locale:

 [1] LC_CTYPE=en_US.ISO8859-1    LC_NUMERIC=C

 [3] LC_TIME=en_US.ISO8859-1     LC_COLLATE=en_US.ISO8859-1

 [5] LC_MONETARY=en_US.ISO8859-1 LC_MESSAGES=C

 [7] LC_PAPER=C                  LC_NAME=C

 [9] LC_ADDRESS=C                LC_TELEPHONE=C

[11] LC_MEASUREMENT=C            LC_IDENTIFICATION=C


attached base packages:

[1] stats     graphics  grDevices datasets  utils     tools     methods

[8] base


other attached packages:

[1] knitr_1.10.5          weaver_1.35.0         codetools_0.2-14

[4] digest_0.6.8          BiocInstaller_1.19.11

>

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