[Bioc-devel] using covr with the parallel package

Charles Determan cdetermanjr at gmail.com
Mon Aug 17 20:30:39 CEST 2015


This may be more appropriate to ask the covr package maintainer on his
github page (https://github.com/jimhester/covr/issues).

Charles

On Mon, Aug 17, 2015 at 1:13 PM, Leonard Goldstein <
goldstein.leonard at gene.com> wrote:

> Hi Jim,
>
> I noticed that when covr calculates test coverage, functions called
> inside mclapply or mcmapply with argument mc.preschedule = FALSE are
> considered untested (even if unit tests exist)
>
> When running checks I only use one core. So an easy fix would be to
> set mc.preschedule to TRUE if mc.cores = 1. But I was wondering if you
> are aware of this behavior and whether there is a way to avoid it?
>
> Many thanks for your help.
>
> Leonard
>
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