[Bioc-devel] plotPCA generic added to BiocGenerics package

Nathaniel Hayden nhayden at fredhutch.org
Tue Nov 18 22:33:57 CET 2014

In response to the discussion around plotPCA ( 
https://stat.ethz.ch/pipermail/bioc-devel/2014-October/006504.html ) , 
the plotPCA generic has been added to the BiocGenerics package. We 
encourage package maintainers to update their packages to use the 
generic, and seek help on this list if needed.

The generic is as follows:
setGeneric("plotPCA", function(object, ...) {

Packages that export an object with 'plotPCA' in the name:
affycoretools: S3 function
CopyNumber450K: S4 generic
DESeq2: S3 function
DESeq: S3 function
DiffBind: 'dba.plotPCA' S3 function
EDASeq: S4 generic
MAIT: S3 function
Rcade: S4 generic
xps: S3 function

Thank you,
Nate Hayden

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