[Bioc-devel] libRblas and libRlapack are broken dependencies for packages in R 3.1.0 on Fedora 20

[E N]

Mr Morgan,

I'm afraid the issue is not completely over. Among the packages that were failing installation, all now success after your guidance but three remain failing. Here are excerpts of the dumps:

ChIPseqR
gcc -m64 -std=gnu99 -shared -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -flto -fpic -Wl,-z,relro -o ChIPseqR.so startScore.o -L/usr/lib64/R/lib -lR
installing to /usr/lib64/R/library/ChIPseqR/libs
** R
** inst
** preparing package for lazy loading
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
unable to load shared object '/usr/lib64/R/library/fBasics/libs/fBasics.so':
libRblas.so: cannot open shared object file: No such file or directory


IdMappingAnalysis
** preparing package for lazy loading
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/usr/lib64/R/library/mclust/libs/mclust.so':
  libRlapack.so: cannot open shared object file: No such file or directory

RamiGO:
** preparing package for lazy loading
Error : .onLoad failed in loadNamespace() for 'igraph', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/usr/lib64/R/library/igraph/libs/igraph.so':
  libRlapack.so: cannot open shared object file: No such file or directory

Perhaps it's better to get someone with a Fedora 20 that understand better than I do debugging package installation, since I'm not far abusing your patience.

Eric.