[Bioc-devel] Problem on Installation of DEseq2

[jarod_v6 at libero.it]

>    >I can't install this  DESEq2 on the RHEL 5.5 server:
>    >
>    >* installing *source* package ‘RcppArmadillo’ ...
>    >** package ‘RcppArmadillo’ successfully unpacked and MD5 sums 
checked
>    >* checking LAPACK_LIBS:  divide-and-conquer complex SVD unavailable via 
R-
>    >supplied LAPACK
>    >* divide-and-conquer algorithm for complex SVD will be redirected to 
default
>    >** libs
>    >g++ -I/illumina/software/PROG/R302/lib64/R/include -DNDEBUG  -
>    >I/usr/local/include -I"
>    >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include"  -I..
/inst/include 
>    -
>    >fpic  -g -O2  -c RcppArmadillo.cpp -o RcppArmadillo.o
>    >In file included from ../inst/include/armadillo:42,
>    >                 from ../inst/include/RcppArmadilloForward.h:37,
>    >                 from ../inst/include/RcppArmadillo.h:30,
>    >                 from RcppArmadillo.cpp:22:
>    >../inst/include/armadillo_bits/compiler_setup.hpp:119:6: error: #error 
"*** 
>    >Need a newer compiler ***"
>    >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include/Rcpp/Date.h: 
In 
>    >member function ‘void Rcpp::Date::update_tm()’:
>    >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include/Rcpp/Date.h:
108: 
>
>- Ignored:
>    >warning: converting to ‘time_t’ from ‘double’
>    >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include/Rcpp/Date.h: 
In 
>    >function ‘Rcpp::Date Rcpp::operator+(const Rcpp::Date&, int)’:
>    >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include/Rcpp/Date.h:
139: 
>    >warning: converting to ‘time_t’ from ‘double’
>    >make: *** [RcppArmadillo.o] Error 1
>    >ERROR: compilation failed for package ‘RcppArmadillo’
>    >* removing ‘/illumina/software/PROG/R302/lib64/R/library/RcppArmadilloâ
€™
>    >* restoring previous 
>    >‘/illumina/software/PROG/R302/lib64/R/library/RcppArmadillo’
>    >
>    >The downloaded source packages are in
>    >	‘/tmp/Rtmp30ZzKT/downloaded_packages’
>    >Updating HTML index of packages in '.Library'
>    >Making 'packages.html' ... done
>    >Warning messages:
>    >1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
>    >  installation of package ‘RcppArmadillo’ had non-zero exit status
>    >2: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
>    >  installation of package ‘DESeq2’ had non-zero exit status
>    >3: In install.packages(update[instlib == l, "Package"], l, contriburl 
>    >
>    >sessionInfo()
>    >R version 3.0.2 (2013-09-25)
>    >Platform: x86_64-unknown-linux-gnu (64-bit)
>    >
>    >locale:
>    > [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
>    > [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
>    > [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
>    > [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
>    > [9] LC_ADDRESS=C               LC_TELEPHONE=C            
>    >[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
>    >
>    >attached base packages:
>    >[1] stats     graphics  grDevices utils     datasets  methods   
base     
>    >
>    >other attached packages:
>    >[1] BiocInstaller_1.12.1
>    >
>    >loaded via a namespace (and not attached):
>    >[1] tools_3.0.
>    >Any Idea how can resolve? 
>    >
>    >
>    
>    
>
>- Done.
>
>