[Bioc-devel] Fwd: Bioconductor git-svn bridge is available

[Dan Tenenbaum]

----- Original Message -----
> From: "Dan Tenenbaum" <dtenenba at fhcrc.org>
> To: "Kasper Daniel Hansen" <kasperdanielhansen at gmail.com>
> Cc: bioc-devel at r-project.org, "Sean Davis" <sdavis2 at mail.nih.gov>
> Sent: Friday, February 21, 2014 1:48:05 PM
> Subject: Re: [Bioc-devel] Fwd: Bioconductor git-svn bridge is available
> 
> 
> 
> ----- Original Message -----
> > From: "Kasper Daniel Hansen" <kasperdanielhansen at gmail.com>
> > To: "Dan Tenenbaum" <dtenenba at fhcrc.org>
> > Cc: "Sean Davis" <sdavis2 at mail.nih.gov>, bioc-devel at r-project.org
> > Sent: Friday, February 21, 2014 1:26:10 PM
> > Subject: Re: [Bioc-devel] Fwd: Bioconductor git-svn bridge is
> > available
> > 
> > 
> > Just tried to add a completely empty github repository. Then I got
> > an
> > error message saying something like "the repos needs a master
> > branch" (sorry, I did not copy and paste), when I tried to create
> > the github-svn bridge. I then added a temporary file to the github
> > branch and things worked. You may need to update HOWTO, although I
> > am pretty sure I did not have to do this last time.
> > 
> 
> This is a regression. Will fix. Thanks.

This should be fixed now.
Thanks,
Dan


> Dan
> 
> 
> > 
> > Kasper
> > 
> > 
> > 
> > On Fri, Feb 21, 2014 at 12:00 PM, Kasper Daniel Hansen <
> > kasperdanielhansen at gmail.com > wrote:
> > 
> > 
> > 
> > Thanks everyone, it was worth a question.
> > 
> > 
> > Perhaps I will figure out how to use submodules.
> > 
> > 
> > Kasper
> > 
> > 
> > 
> > 
> > 
> > On Fri, Feb 21, 2014 at 11:45 AM, Dan Tenenbaum <
> > dtenenba at fhcrc.org
> > > wrote:
> > 
> > 
> > 
> > 
> > 
> > ----- Original Message -----
> > > From: "Sean Davis" < sdavis2 at mail.nih.gov >
> > > To: "Kasper Daniel Hansen" < kasperdanielhansen at gmail.com >
> > > Cc: bioc-devel at r-project.org , "Dan Tenenbaum" <
> > > dtenenba at fhcrc.org
> > > >
> > > Sent: Friday, February 21, 2014 7:08:21 AM
> > > Subject: Re: [Bioc-devel] Fwd: Bioconductor git-svn bridge is
> > > available
> > > 
> > > 
> > > 
> > 
> > > I doubt this is possible given the atomic nature of a git
> > > repository.
> > > You might look at using a second git repository and including the
> > > minfi package as a git submodule of that second repository. Then,
> > > you can keep things in sync, but the minfi repository remains
> > > atomic.
> > > 
> > 
> > I think Sean is correct.
> > Dan
> > 
> > 
> > 
> > 
> > > Sean
> > > On Feb 21, 2014 9:44 AM, "Kasper Daniel Hansen" <
> > > kasperdanielhansen at gmail.com > wrote:
> > > 
> > > 
> > > Question: is it possible to synchronize a subset of a github
> > > repos?
> > > For
> > > minfi, I would like my github to be
> > > 
> > > minfi-devel
> > > /minfi
> > > OTHER SCRIPTS
> > > 
> > > where OTHER SCRIPTS could be notes or test scripts I use for
> > > internal
> > > development. I then only want to synchronize the
> > > minfi-devel/minfi
> > > directory with Bioc.
> > > 
> > > Kasper
> > > 
> > > 
> > > On Sun, Feb 9, 2014 at 9:55 AM, Kasper Daniel Hansen <
> > > kasperdanielhansen at gmail.com > wrote:
> > > 
> > > > Seems to work for me; I have now populated my github repo.
> > > > 
> > > > Thanks for the help,
> > > > Kasper
> > > > 
> > > > 
> > > > On Sun, Feb 9, 2014 at 2:35 AM, Dan Tenenbaum <
> > > > dtenenba at fhcrc.org
> > > > > wrote:
> > > > 
> > > >> This should be fixed now.
> > > >> Thanks.
> > > >> Dan
> > > >> 
> > > >> 
> > > >> ----- Original Message -----
> > > >> > From: "Kasper Daniel Hansen" < kasperdanielhansen at gmail.com
> > > >> > >
> > > >> > To: "Dan Tenenbaum" < dtenenba at fhcrc.org >
> > > >> > Cc: bioc-devel at r-project.org
> > > >> > Sent: Saturday, February 8, 2014 7:07:44 PM
> > > >> > Subject: Re: [Bioc-devel] Fwd: Bioconductor git-svn bridge
> > > >> > is
> > > >> > available
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > Yes, see screenshot
> > > >> > 
> > > >> > 
> > > >> > (I do know I have a whitespace in front of the github url
> > > >> > and
> > > >> > I
> > > >> > get a
> > > >> > note and I fixed it.
> > > >> > 
> > > >> > 
> > > >> > Kasper
> > > >> > 
> > > >> > 
> > > >> > On Sat, Feb 8, 2014 at 9:56 PM, Dan Tenenbaum <
> > > >> > dtenenba at fhcrc.org >
> > > >> > wrote:
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > https://github.com/kasperdanielhansen/minfi
> > > >> > 
> > > >> > 
> > > >> 
> > > > 
> > > > 
> > > 
> > > [[alternative HTML version deleted]]
> > > 
> > > _______________________________________________
> > > Bioc-devel at r-project.org mailing list
> > > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> > > 
> > 
> > 
> >
> 
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