[Bioc-devel] daily build problems, how to debug?
dtenenba at fhcrc.org
Thu Feb 13 17:08:54 CET 2014
----- Original Message -----
> From: "Dan Tenenbaum" <dtenenba at fhcrc.org>
> To: "J. Hettling" <j.hettling at vu.nl>
> Cc: bioc-devel at r-project.org
> Sent: Thursday, February 13, 2014 8:08:16 AM
> Subject: Re: [Bioc-devel] daily build problems, how to debug?
> ----- Original Message -----
> > From: "J. Hettling" <j.hettling at vu.nl>
> > To: bioc-devel at r-project.org
> > Sent: Thursday, February 13, 2014 4:29:21 AM
> > Subject: [Bioc-devel] daily build problems, how to debug?
> > Dear Bioconductor developers,
> > since updating our package 'BiGGR' on the development branch, the
> > daily built gives errors
> > (see
> > http://www.bioconductor.org/checkResults/2.14/bioc-LATEST/BiGGR/zin2-buildsrc.html).
> > However, on both of my machines R CMD build and R CMD check run
> > without problems (one of them actually running the same OS version
> > as zin2).
> > I see that there are some Latex errors in the vignette building,
> > but
> > cannot really make sense of it.
> > My current approach is trial-and-error, I change what I suspect
> > would
> > cause the error, update the devel package and wait a day until it
> > is
> > build again.
> > Is there a better way to debug this?
> Looks like you had an unnecessary Makefile in vignettes/. It wasn't
> doing anything that R does not automatically do. I removed it and
> the package now builds successfully, so I went ahead and committed
> that change.
This will not be reflected on the build system until tomorrow morning (Seattle time).
> > Kind Regards
> > Hannes
> > [[alternative HTML version deleted]]
> > _______________________________________________
> > Bioc-devel at r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
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