[Bioc-devel] About Hg38 BSgenome

[James W. MacDonald]

Hi Raffaele,

See here:

http://bioconductor.org/packages/release/data/annotation/html/BSgenome.Hsapiens.NCBI.GRCh38.html

Best,

Jim



On Tue, Dec 2, 2014 at 9:10 AM, Raffaele Adolfo Calogero <
raffaele.calogero at unito.it> wrote:

> Dear Bioc Team,
> I am the maintainer of chimera package.
> Recently some of the users asked for the possibility to use chimera with
> fusions detected on hg38 human genome.
> I checked for the availability of hg38 as BSgenome but I did not find it in
> Bioc repository, as instead there is TxDb.Hsapiens.UCSC.hg38.knownGene. I
> would like to know if it is planned the release of hg38 as BSgenome, maybe
> in the next Bioc release.
> In case it is not planned could please suggest me what to read to build it?
> Cheers
> Raffaele
>
> --
> ----------------------------------------
> Prof. Raffaele A. Calogero
> Bioinformatics and Genomics Unit
> MBC Centro di Biotecnologie Molecolari
> Via Nizza 52, Torino 10126
> Tel.   ++39 0116706457
> Fax    ++39 0112366457
> Mobile ++39 3333827080
> email: raffaele.calogero at unito.it
>        raffaele.calogero at gmail.com
> www:   http://www.bioinformatica.unito.it
>
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-- 
James W. MacDonald, M.S.
Biostatistician
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099

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