[Bioc-devel] About Hg38 BSgenome

[Julian Gehring]

Hi Raffaele,
You can find it under the name 
  BSgenome.Hsapiens.NCBI.GRCh38
  http://bioconductor.org/packages/release/data/annotation/html/BSgenome.Hsapiens.NCBI.GRCh38.html (http://bioconductor.org/packages/release/data/annotation/html/BSgenome.Hsapiens.NCBI.GRCh38.html)
The naming of the chromosomes has been harmonized between UCSC and GRCh with the new release, so there should be no need for two versions at the genome level.
Best
Julian
On Tue, Dec 2, 2014 at 15:12, Raffaele Adolfo Calogero  wrote:
Dear Bioc Team,
I am the maintainer of chimera package.
Recently some of the users asked for the possibility to use chimera with
fusions detected on hg38 human genome.
I checked for the availability of hg38 as BSgenome but I did not find it in
Bioc repository, as instead there is TxDb.Hsapiens.UCSC.hg38.knownGene. I
would like to know if it is planned the release of hg38 as BSgenome, maybe
in the next Bioc release.
In case it is not planned could please suggest me what to read to build it?
Cheers
Raffaele

-- 
----------------------------------------
Prof. Raffaele A. Calogero
Bioinformatics and Genomics Unit
MBC Centro di Biotecnologie Molecolari
Via Nizza 52, Torino 10126
Tel.   ++39 0116706457
Fax    ++39 0112366457
Mobile ++39 3333827080
email: raffaele.calogero at unito.it (mailto:raffaele.calogero at unito.it)
raffaele.calogero at gmail.com (mailto:raffaele.calogero at gmail.com)
www:   http://www.bioinformatica.unito.it (http://www.bioinformatica.unito.it)

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