[Bioc-devel] \VignetteIndexEntry

[Martin Morgan]

On 05/20/2013 02:00 PM, Wolfgang Huber wrote:
> I am puzzled by the interpretation of the %\VignetteIndexEntry directive by the build system. On http://www.bioconductor.org/packages/devel/bioc/html/genefilter.html of the four vignettes for this package, two are listed with titles
> 1.  <empy title>
> 2.  Additional plots for: Independent filtering increases power for detecting differentially expressed genes
>
> whereas in the .Rnw files, these two lines are provided ( https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/genefilter/inst/doc  )
>
> 1. %\VignetteIndexEntry{Diagnostics for independent filtering}
> 2. %\VignetteIndexEntry{Additional plots for: Independent filtering increases power for detecting differentially expressed genes, Bourgon et al., PNAS (2010)}
>
> both of these do not match what is rendered (the first more obviously so). Anybody have an idea what's wrong or how to properly do this?
>

If I build and install the package from source, and then ask for 
`vignette(package="genefilter")` the full content of \VignetteIndexEntry 
appears. So I think this is post-processing of the build system; Dan is away 
today but will have more information in the near future.

Martin

> 	Best wishes
> 	Wolfgang
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