[Bioc-devel] graphite build error on George2

[Martin Morgan]

On 03/28/2013 03:20 AM, Enrica wrote:
> Dear Bioconductor,
>
> I'm one of the authors of the graphite package.
>
> I've noticed that the build host george2 seems to have a problem building
> the package. In particular, it seems there is a segmentation fault caused
> by the function sp_moralize(). This belongs to the CRAN package gRbase,
> which we indirectly depend upon because we use topologyGSA (CRAN) and
> clipper (BioC).
>
> Unfortunately, we have been thus far unable to reproduce the error on our
> Linux systems. Those include: Debian Testing - 64 bit, Ubuntu 12.10 and
> Ubuntu LTS 12.04.1. We are in touch with the clipper package maintainer
> that has the same problem.
>
> We would clearly like understand how to fix this in time for the 2.12
> release, but being unable to reproduce the issue makes things quite
> difficult. Do you have any suggestion?

The basic approach is outlined here

   http://bioconductor.org/developers/c-debugging/

Martin

>
> Thanks in advance!
>
> Best,
> Enrica
>
> 	[[alternative HTML version deleted]]
>
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