[Bioc-devel] graphite build error on George2

Martin Morgan mtmorgan at fhcrc.org
Thu Mar 28 13:40:13 CET 2013

On 03/28/2013 03:20 AM, Enrica wrote:
> Dear Bioconductor,
> I'm one of the authors of the graphite package.
> I've noticed that the build host george2 seems to have a problem building
> the package. In particular, it seems there is a segmentation fault caused
> by the function sp_moralize(). This belongs to the CRAN package gRbase,
> which we indirectly depend upon because we use topologyGSA (CRAN) and
> clipper (BioC).
> Unfortunately, we have been thus far unable to reproduce the error on our
> Linux systems. Those include: Debian Testing - 64 bit, Ubuntu 12.10 and
> Ubuntu LTS 12.04.1. We are in touch with the clipper package maintainer
> that has the same problem.
> We would clearly like understand how to fix this in time for the 2.12
> release, but being unable to reproduce the issue makes things quite
> difficult. Do you have any suggestion?

The basic approach is outlined here



> Thanks in advance!
> Best,
> Enrica
> 	[[alternative HTML version deleted]]
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