[Bioc-devel] BioC 2013, July 17 (Developer Day) 18-19: 'Early' registration deadline July 1
Martin Morgan
mtmorgan at fhcrc.org
Mon Jul 1 04:14:47 CEST 2013
Bioconductors,
We're looking forward to an exciting conference. The 'early' registration
deadline is July 1.
http://bioconductor.org/bioc2013
Be sure to share the attached poster with colleagues!
Morning Scientific Presentations
Olivier Elemento Cancer as a Darwinian process: insights from next-generation
sequencing • Levi Waldron Meta-analysis for prognostic and predictive gene
signatures of late-stage ovarian cancer • Fabian Gruber Extensive variation in
chromatin states across human individuals and populations • Josh Akey Tales of
human history from 6,500 exome sequences • Kasper Hansen A genome-wide look at
DNA methylation • New this year, short presentations from the Bioconductor
community: Gregoire Pau; Laurent Gatto; Rory Stark; Matthew McCall; Tim Triche;
Alejandro Reyes.
Afternoon Bioconductor Software Workshops (tentative)
R / Bioconductor for everyone • Analysis of RNA-Seq differential gene expression
and exon use with the DESeq2 and DEXSeq • From reads to genes in less than 10 R
commands • Efficient manipulation of high-throughput sequence data in
Bioconductor • A pipeline that parallelizes R scripts improves DNA sequence
alignment and analysis • ReportingTools: an automated result processing toolkit
for high throughput genomic analyses • Interactive visualization in Bioconductor
using Epivizr • Reproducible research using RStudio, knitr and git • Developing
apps with BaseSpaceR • Variant Calling with Bioconductor •
Variant-transcription factor-phenotype networks • Discovering gene regulatory
mutations • minfi and shinyMethyl: winning packages for methylation analysis • A
Bioconductor pipeline for ChIP-Seq experiments • Differential analysis of
ChIP-seq data • Cheminformatics of drug-like small molecule data • Accessing
public data repositories with Bioconductor • Annotations in Bioconductor •
RGalaxy / AnnotationHub
See you in Seattle!
Martin
--
Dr. Martin Morgan, PhD
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N.
PO Box 19024 Seattle, WA 98109
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