[Bioc-devel] R: developing a bioconductor package with TDD (RUnit)

Davide Rambaldi davide.rambaldi at ieo.eu
Fri Jan 18 17:26:42 CET 2013


Hello, I am trying to follow the bioconductor RUnit guidelines (http://www.bioconductor.org/developers/unitTesting-guidelines/#duringDevelopment)

I have followed the the minimal setup so I have:

Suggests: RUnit, BiocGenerics in DESCRIPTION

BiocGenerics:::testPackage("MyPackage") in MyPackage/tests/runTests.R

and some test_XXX.R files in MyPackage/inst/unitTests/

If I run a single test files with:

library(RUnit)
source("LIBRARY FILES")
source("MyPackage/inst/unitTests/test_getKeywordValue.R")
test_getKeywordValue()

The test run (and fails when need to fail), but if I run

R CMD check MyPackage

The command say:

* checking tests ...
  Running ‘runTests.R’
 OK

But don't run my tests in MyPackage/inst/unitTests directory...

What I missing?

Platform: x86_64-apple-darwin9.8.0 
R version 2.15.2 (2012-10-26)

Best Regards and thanks in Advance


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PLEASE NOTE MY NEW EMAIL ADDRESS
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Davide Rambaldi, PhD.
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IEO ~ MolMed
[e] davide.rambaldi at ieo.eu
[e] davide.rambaldi at gmail.com



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