[Bioc-devel] BioC question

[Dan Tenenbaum]

On Wed, Feb 6, 2013 at 10:04 AM, Thomas Sandmann
<sandmann.thomas at gene.com> wrote:
> Dear BioC developers,
>
> I upgraded to R 3.0.0 on my Mac (10.6.8) to make my gCMAP package ready for
> the next BioC release.
> Afterward, I reinstalled all the required BioC packages using biocLite.
>
> My package depends on "org.Hs.eg.db". Unfortunately, installing the latest
> "org.Hs.eg.db" via biocLite gives me the following error:
> Error: package ‘org.Hs.eg.db’ was built before R 3.0.0: please re-install it
>
> I am using R 3.0.0 and biocLite retrieved the org.Hs.eg.db package from
> http://bioconductor.org/packages/2.12/data/annotation/bin/macosx/leopard/contrib/3.0/org.Hs.eg.db_2.8.0.tgz
>
> Perhaps the "org.Hs.eg.db" package has not been rebuilt with R 3.0.0, yet ?
> Any advice on how to proceed ?
>

Do this:
biocLite("org.Hs.eg.db", type="source")

Dan


> Thanks a lot,
> Thomas
>
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