[Bioc-devel] GenomicRanges: Storing 'seqlengths' as numeric
Julian Gehring
julian.gehring at embl.de
Tue Dec 3 11:29:41 CET 2013
Hi,
Some of the chromosomes out in the world are fairly large (e.g. wheat
chr 3B with > 995 Mbp [1]). Currently, the 'seqlengths' of the
reference sequence are stored as 'integers' which do not allow to store
lengths of this size. Are there any plans of switching to 'doubles' or
64-bit integers for the 'seqlengths' slot? Or extending the slot such
that a user can store it either as integer or floating-point number?
Best wishes
Julian
[1] http://www.sciencemag.org/content/322/5898/101
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