[Bioc-devel] IlluminaID2nuID Incorrectly Uses If Statement

Gang Feng g-feng at northwestern.edu
Mon Dec 2 15:53:05 CET 2013

Hi, Dario

Thanks for comment.

Could you run getChipInfo(rownames(stage3expression), species = "Human")
and show the return values?



On 12/2/13 12:00 AM, "Dario Strbenac" <dstr7320 at uni.sydney.edu.au> wrote:

>> patientNuIDs <- IlluminaID2nuID(rownames(stage3expression), species =
>Warning message:
>In if (!is.na(chipInfo$IDType)) { :
>  the condition has length > 1 and only the first element will be used
>I think this is not intended. It's never a good idea to pass a vector of
>values to an if statement. The arrays are an older type. They use probe
>IDs like 6450255 not like ILMN_12345. I have another batch of newer
>arrays. No warning happens for them.
>Dario Strbenac
>PhD Student
>University of Sydney
>Camperdown NSW 2050
>Bioc-devel at r-project.org mailing list

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