[Bioc-devel] MMDiff: new package for differential ChIP-Seq peaks

[Gabriele Schweikert]

Hi,

this is just to briefly inform you that a new package called MMDiff is  
now available.
It's a statistical testing method specifically designed to compare  
ChIP-Seq data sets. It takes advantage of higher order features to  
detect shape changes in ChIP-Seq peaks and should also be applicable  
to other -Seq methods, like DNase-Seq. Biological replicates are used  
to estimate biological variance. Any comments highly appreciated.


Many thanks,

Gabriele Schweikert




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Dr Gabriele Schweikert
Marie Curie Postdoctoral Research Fellow
School of Informatics,
Wellcome Trust Centre for Cell Biology
University of Edinburgh,
Edinburgh EH8 9AB, UK




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