[Bioc-devel] MMDiff: new package for differential ChIP-Seq peaks

Gabriele Schweikert gschweik at staffmail.ed.ac.uk
Tue Apr 9 14:56:20 CEST 2013


this is just to briefly inform you that a new package called MMDiff is  
now available.
It's a statistical testing method specifically designed to compare  
ChIP-Seq data sets. It takes advantage of higher order features to  
detect shape changes in ChIP-Seq peaks and should also be applicable  
to other -Seq methods, like DNase-Seq. Biological replicates are used  
to estimate biological variance. Any comments highly appreciated.

Many thanks,

Gabriele Schweikert


Dr Gabriele Schweikert
Marie Curie Postdoctoral Research Fellow
School of Informatics,
Wellcome Trust Centre for Cell Biology
University of Edinburgh,
Edinburgh EH8 9AB, UK

The University of Edinburgh is a charitable body, registered in
Scotland, with registration number SC005336.

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