[Bioc-devel] `as.list` and import `image` warnings

[Diego Diez]

Hi Levi,

I had a similar issue with my package (codelink). The problem was the
importFrom call in the NAMESPACE file. In my case importFrom(annotate,
lookUp, htmlpage). I could temporarily avoid the warnings by
commenting out that line and moving package annotate from Imports to
Depends in the DESCRIPTION file. However, I imagine it is better to
solve the original problem which I am not sure where it is. At least
the following thread seems to be related (although it was supposed to
be fixed).

https://stat.ethz.ch/pipermail/r-devel/2012-April/063802.html

Hope this helps,
Diego

-- 
Diego Diez, PhD
Assistant Professor
Bioinformatics and Genomics Laboratory,
WPI Immunology Frontier Research Center (IFReC)
8F Integrated Life Science Building, Osaka University,
3-1 Yamada-oka, Suita, Osaka 565-0871, Japan
Phone: +81-6-6879-4266
Fax: +81-6-6879-4272
diez at ifrec.osaka-u.ac.jp

On Wed, Sep 26, 2012 at 12:55 AM, Levi Waldron
<lwaldron at hsph.harvard.edu> wrote:
> I am getting warnings for the ffpe package, about previous base package
> functions, that I could really use some help in resolving:
>
> * installing *source* package ‘ffpe’ ...
> ** R
> ** inst
> ** preparing package for lazy loading
> Warning: found methods to import for function ‘as.list’ but not the
> generic itself
> Warning: replacing previous import ‘image’ when loading ‘graphics’
> ** help
> *** installing help indices
> ** building package indices
> ** installing vignettes
>    ‘ffpe.Rnw’
> ** testing if installed package can be loaded
> Warning: found methods to import for function ‘as.list’ but not the
> generic itself
> Warning: replacing previous import ‘image’ when loading ‘graphics’
> * DONE (ffpe)
>
> I really apologize for not noticing this until it was pointed out to me,
> but I will resolve it right away as soon as I know how.
>
> Sincerely,
> Levi
>
>
>
> On Fri, Sep 21, 2012 at 8:07 PM, Marc Carlson <mcarlson at fhcrc.org> wrote:
>
>> Hello,
>>
>> This is a courtesy warning because your package is currently being
>> affected by warnings or errors in the build system.  You can see the
>> current report here (updated daily):
>>
>> http://bioconductor.org/checkResults/devel/bioc-LATEST/
>>
>> According to our release schedule, all packages are expected to be free
>> of errors by the 17th (that was last week), and free of warnings by the
>> 24th (this is next Monday).  Packages that are not cleaned up by this
>> time may be excluded from the upcoming release, which is why you are
>> receiving this courtesy email as a warning.  In case you have questions
>> about the release schedule, you can see our release schedule at this link:
>>
>> http://www.bioconductor.org/developers/release-schedule/
>>
>> Your packages are important to the Bioconductor project, so please let
>> me know if I can help you to meet these deadlines.
>>
>>
>>    Marc
>>
>>
>
>
> --
> Levi Waldron
> Post-doctoral fellow
> Department of Biostatistics, Harvard School of Public Health
> Department of Biostatistics and Computational Biology, Dana-Farber Cancer
> Institute
> Building 1, room 412C
> 655 Huntington Avenue
> Boston, Massachusetts 02115
> mobile: (617) 851-6849
> fax: (617) 432-5619
> http://www.hsph.harvard.edu/research/levi-waldron/
>
>
>
> --
> Levi Waldron
> Post-doctoral fellow
> Department of Biostatistics, Harvard School of Public Health
> Department of Biostatistics and Computational Biology, Dana-Farber Cancer
> Institute
> Building 1, room 412C
> 655 Huntington Avenue
> Boston, Massachusetts 02115
> mobile: (617) 851-6849
> fax: (617) 432-5619
> http://www.hsph.harvard.edu/research/levi-waldron/
>
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>
>
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