[Bioc-devel] error loading Biostrings

Robert Scharpf rscharpf at jhsph.edu
Tue Oct 23 13:27:50 CEST 2012


I'm having trouble loading the Biostrings package (the Biostrings.so shared library) after installation of the most recent R-devel (Oct 22).  There is no error on the BioC build report, but BioC is building packages from the Oct 5 R-devel. 



biocLite("Biostrings", type="source")

*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/home/bst/student/rscharpf/Library/R/2.16-bioc-devel/library/Biostrings/libs/Biostrings.so':
  /home/bst/student/rscharpf/Library/R/2.16-bioc-devel/library/Biostrings/libs/Biostrings.so: undefined symbol: rcont2
Error: loading failed

Session info:

R Under development (unstable) (2012-10-22 r60997)
Platform: x86_64-unknown-linux-gnu (64-bit)

 [1] LC_CTYPE=en_US.iso885915       LC_NUMERIC=C                  
 [3] LC_TIME=en_US.iso885915        LC_COLLATE=en_US.iso885915    
 [5] LC_MONETARY=en_US.iso885915    LC_MESSAGES=en_US.iso885915   
 [7] LC_PAPER=C                     LC_NAME=C                     
 [9] LC_ADDRESS=C                   LC_TELEPHONE=C                
[11] LC_MEASUREMENT=en_US.iso885915 LC_IDENTIFICATION=C           

attached base packages:
[1] stats     graphics  grDevices datasets  utils     methods   base     

other attached packages:
[1] BiocInstaller_1.9.4

loaded via a namespace (and not attached):
[1] tools_2.16.0

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