[Bioc-devel] bug in plotMotifLogo [package: motifStack]

[Ou, Jianhong]

Dear Diego,

Thanks a lot for reporting and fixing the bug.

Yours sincerely,

Jianhong Ou

jianhong.ou at umassmed.edu


On Oct 11, 2012, at 2:17 AM, Diego Diez wrote:

> Hi all,
> 
> there seems to be a small bug in the plotMotifLogo() function that
> plots repeatedly (once per position) the x-axis. Below there is a diff
> with the small change that prevents this from happening:
> 
> *** Downloads/motifStack/R/motifStack.R	Tue Oct  2 08:40:36 2012
> --- Desktop/motifStack_fixed.R	Thu Oct 11 15:08:44 2012
> ***************
> *** 70,77 ****
>                  y.pos<-y.pos+h
>              }
>              x.pos<-x.pos+dw
> -             if(xaxis) plotXaxis(pfm, p)
>          }
>          if(yaxis) plotYaxis(pfm)
>          if(!is.na(xlab)) mtext(xlab,1,line=2,cex=xlcex)
>          if(!is.na(ylab)) mtext(ylab,2,line=2,cex=ylcex)
> --- 70,77 ----
>                  y.pos<-y.pos+h
>              }
>              x.pos<-x.pos+dw
>          }
> +        if(xaxis) plotXaxis(pfm, p)
>          if(yaxis) plotYaxis(pfm)
>          if(!is.na(xlab)) mtext(xlab,1,line=2,cex=xlcex)
>          if(!is.na(ylab)) mtext(ylab,2,line=2,cex=ylcex)
> 
> ######################## end of patch ####################
> 
> All the best,
> 
> -- 
> Diego Diez, PhD
> Assistant Professor
> Bioinformatics and Genomics Laboratory,
> WPI Immunology Frontier Research Center (IFReC)
> 8F Integrated Life Science Building, Osaka University,
> 3-1 Yamada-oka, Suita, Osaka 565-0871, Japan
> Phone: +81-6-6879-4266
> Fax: +81-6-6879-4272
> diez at ifrec.osaka-u.ac.jp
> 
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